PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28192.m000255
Common NameRCOM_0191940
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 284aa    MW: 30714.6 Da    PI: 8.5923
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28192.m000255genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19154204255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  28192.m000255 154 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRG 204
                    8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.57E-31153212No hitNo description
Gene3DG3DSA:3.30.730.102.6E-32153212IPR001471AP2/ERF domain
PROSITE profilePS5103224.21154212IPR001471AP2/ERF domain
SMARTSM003801.1E-39154218IPR001471AP2/ERF domain
PfamPF008471.1E-13154204IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-23154214IPR016177DNA-binding domain
PRINTSPR003675.8E-11155166IPR001471AP2/ERF domain
PRINTSPR003675.8E-11178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MMCEQATGDS NYAAIESVRR HLLEGGESIM SSFSSNISNT TPAVATTGPK PVYCRSSSFS  60
SLYPCLSENW GDLPLKADDY EDMLLYGVLR DALTVGWVPQ DNFPLVKSEP LDNFPLSSLP  120
LPPPMPEEIF TPPPVVTAQP SPPVASPAVA KGKHYRGVRQ RPWGKFAAEI RDPAKNGARV  180
WLGTFETAED AALAYDRAAY RMRGSRALLN FPLRVNNGEP DPVRVTSKRS SPEPSSSSSE  240
SGSPKRRKKA AVSVKAQAGV QLGNVARCQQ VANGTHGEQQ LVSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-44150219170ATERF1
3gcc_A9e-44150219170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap28192.m000255
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1536432e-41AC153643.25 Medicago truncatula chromosome 8 clone mth2-109d3, complete sequence.
GenBankEF1252122e-41EF125212.1 Medicago truncatula ethylene-responsive transcription factor 1A (ERF1A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532361.20.0ethylene-responsive transcription factor 2
SwissprotO803374e-88EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLB9T2920.0B9T292_RICCO; Ethylene-responsive transcription factor 1A, putative
STRINGXP_002532361.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.14e-62ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]