PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28206.m000104
Common NameLOC8261646, RCOM_0198920
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 374aa    MW: 41107.6 Da    PI: 6.74
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28206.m000104genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.5e-21176226256
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  28206.m000104 176 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 226
                    59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.15E-34175235No hitNo description
PROSITE profilePS5103223.235176233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-32176234IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-23176234IPR016177DNA-binding domain
SMARTSM003804.4E-38176239IPR001471AP2/ERF domain
PfamPF008471.9E-14177226IPR001471AP2/ERF domain
PRINTSPR003673.7E-11177188IPR001471AP2/ERF domain
PRINTSPR003673.7E-11199215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAAAIDFYSS STTPSVFSFI DPGREELLKA LEPFMKSASS PTSTSYNSSS SSVSHSTSSD  60
SLSPSPFYFP SYPSYDSSIP TMYPDFCSPL STHLFSQGFS GYNQLGFEQT GSIGLNHLTP  120
SQILQIQAQI HLQQQQQIAN LATNSNLIHN DKKLKHLAPK PVPMKQSASP PKPTKLYRGV  180
RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDKAA YKLRGEFARL NFPHLRHQGA  240
HVSGEFGDYK PLHSSVDAKL QAICQSLANS QKQGKSGESS SVADSKANTS AYLQAKKEQD  300
CSMKREIEDY KVEAIPTGSP VAPASSSDES SAGSSSPQSE ISFLDFSDSS SQWDESENFC  360
LEKYPSVEID WASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-22175233160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap28206.m000104
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5479742e-41KF547974.1 Solanum melongena cultivar Pusa Uttam ethylene responsive factor 07 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533146.10.0ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E41e-92RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLB9T4H70.0B9T4H7_RICCO; DNA binding protein, putative
STRINGXP_002533146.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-55related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]