PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28207.m000107
Common NameRCOM_0200170
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 239aa    MW: 26001.8 Da    PI: 8.2063
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28207.m000107genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.75.7e-3141081100
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C++dC++ p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg++++ ++ql+q++
  28207.m000107   4 SCSGCRVLRKGCSDDCTIKPCLqwlnsPKSQANATLFLAKFYGRAGLINLINAGPQHLRPAIFKSLLYEACGRIVNPVYGSVGLLWTRNWQLCQAA 99 
                    6*********************************************************************************************** PP

         DUF260  92 aelallkee 100
                    +e++l++e+
  28207.m000107 100 VEAVLRGEP 108
                    **9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9363109IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRLSCSGCRV LRKGCSDDCT IKPCLQWLNS PKSQANATLF LAKFYGRAGL INLINAGPQH  60
LRPAIFKSLL YEACGRIVNP VYGSVGLLWT RNWQLCQAAV EAVLRGEPIK QISSSNELAI  120
NACEIRHVYK DDSLATMPAV SDQLHKIKRK PKSQFKRSAS KPKLKVEPAL EFEAETGLLS  180
LSGLASHDSG VSWRPTIDSD SGEGDSMSAE TVEASLAKLD EQADGSNVEL ELTLGLKIS
Cis-element ? help Back to Top
SourceLink
PlantRegMap28207.m000107
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533415.21e-176LOB domain-containing protein 40
SwissprotQ9M8865e-73LBD41_ARATH; LOB domain-containing protein 41
TrEMBLB9T5961e-175B9T596_RICCO; LOB domain-containing protein, putative
STRINGXP_002533415.11e-176(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-75LOB domain-containing protein 41