PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28226.m000868
Common NameLOC8282097, RCOM_0205380
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 419aa    MW: 47667.5 Da    PI: 5.2242
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28226.m000868genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix34.36.3e-1148124279
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                    Wt +e l L++    +e +  ++ +  ++W  + ++++   ++r+ +qC++kw++l  +y +ik++++k +sess  +
  28226.m000868  48 WTTKESLILVNEIAAVEGDCLKALSTHQKWNIIVQNCSVLDVSRTLNQCRSKWSSLLADYNRIKQWDSKSSSESS-YW 124
                    ********************************************************************9765554.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-447105IPR009057Homeodomain-like
PfamPF138372.9E-847123No hitNo description
PROSITE profilePS500907.31748104IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MEGEISEIPK TAKRRGLKPK KSAEESSNAN SYKAPSPPRT RSQVAPDWTT KESLILVNEI  60
AAVEGDCLKA LSTHQKWNII VQNCSVLDVS RTLNQCRSKW SSLLADYNRI KQWDSKSSSE  120
SSYWLLDPPT RDRCGLPHNF DYELFRAIDH YVRAQKDHPD TDPDTDPEAD ADLLDVIAKL  180
GSKRHRRRSM SLKIQPEETS QNCCTKEQAQ ILHAEEEPQQ SCKEENLQMR YDKDQPQTVD  240
RGEEPQDNLM EEQSQESCRF GNPEKSHVEE KPQESLVEEE PKNISMWKKK ITGTEEKEQL  300
IVEKLHGNAE SIRGVVQGSL PEVVEFGAGD SKSRDSLVVE KSKIIRTRKK KTSGAEEMMM  360
VEKLRANAEL IHDIVQGNLP QSENCPTDVI RRQGDKLIAC LGEIVNILNQ FPYLVQECD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1814PKTAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap28226.m000868
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527997.10.0trihelix transcription factor ASR3
TrEMBLB9SPS80.0B9SPS8_RICCO; Transcription factor, putative
STRINGXP_002527997.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67322633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.12e-42sequence-specific DNA binding transcription factors