PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28229.m000059
Common NameRCOM_0207050
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 146aa    MW: 16829.8 Da    PI: 5.1754
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28229.m000059genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.19.4e-1280125248
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 
                    ppG++F+P d elvv+yL+kk+ +++l+  + i+ev +y+++P++L 
  28229.m000059  80 PPGYKFKPFDRELVVFYLQKKILHEPLPP-NRIREVILYNYNPEELA 125
                    9*************************999.77**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-1273134IPR003441NAC domain
PROSITE profilePS5100515.00579146IPR003441NAC domain
PfamPF023659.3E-680129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MEDHREQKLF AIINPNNETK NTTPTNPGLS STNDATPCRG TIINNDDDNG SDAFVGTVTN  60
NSQIVPVHHE DDSYYFNSFP PGYKFKPFDR ELVVFYLQKK ILHEPLPPNR IREVILYNYN  120
PEELADYFFP CNIYFGIHKS MVGLRN
Cis-element ? help Back to Top
SourceLink
PlantRegMap28229.m000059
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9T7U91e-104B9T7U9_RICCO; Uncharacterized protein
STRINGXP_002534318.11e-104(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2587622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-10NAC domain containing protein 94