PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28262

Common Name

SELMODRAFT_28262

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 90aa MW: 9997.4 Da PI: 5.7815

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28262	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.8e-05	4	38	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +++ L++l+ + +K + a++L +A+ YIk L 28262 4 KLGERITALQQLVAPF-----GKTDTASVLLEAIGYIKFL 38 6668899999999998.....8****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.97E-6	1	43	No hit	No description
PROSITE profile	PS50888	11.839	1	38	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-11	1	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-9	3	47	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
RKEKLGERIT ALQQLVAPFG KTDTASVLLE AIGYIKFLHD QVQVMSQITL NTSPNNDEPR 60 QDLRSRGLCL VPISCTLQVA NDNGADFWTP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002527479.2	4e-41	transcription factor bHLH113
Swissprot	Q7XHI5	3e-33	BH133_ARATH; Transcription factor bHLH133
Swissprot	Q9LT67	2e-33	BH113_ARATH; Transcription factor bHLH113
TrEMBL	D8RPY7	1e-60	D8RPY7_SELML; Uncharacterized protein (Fragment)
STRING	EFJ25564	2e-61	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1342	13	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-35	bHLH family protein

Link Out ? help Back to Top
Phytozome	28262
Entrez Gene	9637940

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kumar V, et al. KIX domain of AtMed15a, a Mediator subunit of Arabidopsis, is required for its interaction with different proteins. Plant Signal Behav, 2018. 13(2): p. e1428514 [PMID:29341856]