PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28271.m000023
Common NameRCOM_0212060
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 260aa    MW: 29003.5 Da    PI: 8.7093
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28271.m000023genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.6e-182875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llv++++ +G g+W++ a++ g++Rt+k+c++rw++yl
    28271.m000023 28 RGPWTLEEDTLLVHCIASHGEGRWNLLAKRAGLRRTGKSCRLRWLNYL 75
                     89********************************************97 PP
2Myb_DNA-binding551.8e-1781124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l++d++ +lG++ W++Ia++++ gRt++++k++w++
    28271.m000023  81 RGNLTPQEQLLILDLHSKLGNR-WSKIAQHLP-GRTDNEIKNYWRT 124
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.6232379IPR017930Myb domain
SuperFamilySSF466897.59E-3126122IPR009057Homeodomain-like
SMARTSM007171.0E-152777IPR001005SANT/Myb domain
PfamPF002494.0E-172875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-222982IPR009057Homeodomain-like
CDDcd001675.28E-123075No hitNo description
PROSITE profilePS5129420.85780130IPR017930Myb domain
SMARTSM007173.9E-1580128IPR001005SANT/Myb domain
PfamPF002497.4E-1681124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2483129IPR009057Homeodomain-like
CDDcd001671.57E-1185124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSSLSKSRVS NNSSDEADAP DDHHELRRGP WTLEEDTLLV HCIASHGEGR WNLLAKRAGL  60
RRTGKSCRLR WLNYLKPDVK RGNLTPQEQL LILDLHSKLG NRWSKIAQHL PGRTDNEIKN  120
YWRTRVQKQA RHLKIDANST AFQEIVRCFW IPRLLQKIEG STSSPSCSCS SSFSSSSSSA  180
VLSQNSAVSQ PVDCSHVHNL PLTPPSLPPL PRQEISGQGK LIEIHNLEGR PEHNSDSEQG  240
STSCISSSTE SMNISQISQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27251304108B-MYB
1gv2_A8e-27251301105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap28271.m000023
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534590.20.0transcription factor MYB62, partial
SwissprotQ9C9G73e-77MYB62_ARATH; Transcription factor MYB62
TrEMBLB9T8M10.0B9T8M1_RICCO; DNA binding protein, putative (Fragment)
STRINGXP_002534590.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-75myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]