PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28307.m000017
Common NameRCOM_0217590
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 249aa    MW: 28222.2 Da    PI: 4.3887
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28307.m000017genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.91.7e-133322756
                   HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56
                    e++ +LA++lgL+ rqV vWFqNrRa++k
  28307.m000017  3 PERKVKLAQELGLQPRQVAVWFQNRRARWK 32
                   67889************************9 PP
2HD-ZIP_I/II97.99.8e-321672490
    HD-ZIP_I/II 24 LeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
                   LeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y++lk + ++L++++e+L +e
  28307.m000017  1 LEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYESLKVNYDSLQHDNEALLKE 67
                   89************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0072138IPR001356Homeobox domain
PROSITE profilePS5007113.88134IPR001356Homeobox domain
SuperFamilySSF466892.01E-12245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-14241IPR009057Homeodomain-like
PfamPF000468.3E-11332IPR001356Homeobox domain
CDDcd000867.07E-11335No hitNo description
PRINTSPR000316.1E-6514IPR000047Helix-turn-helix motif
PROSITE patternPS000270932IPR017970Homeobox, conserved site
PRINTSPR000316.1E-61430IPR000047Helix-turn-helix motif
PfamPF021837.9E-153467IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
LEPERKVKLA QELGLQPRQV AVWFQNRRAR WKTKQLERDY GVLKANYESL KVNYDSLQHD  60
NEALLKEATV TGFKLEISLY TTPIRELKAK LNDENTESNV SVKEEIILPE SDDKATKKPP  120
LVDSLAAAET KEDLNYDSFN NNNGVAEVAT FFPDFKDGSS DSDSSAILNE DNSPISSSGI  180
LQNHQLIMSP PPASSSSLDC FQFTSSKAYN QTQFVKMEEH NFFSSEEACN FFSDDQAPTL  240
QWYCPDQWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12634RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap28307.m000017
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015584147.11e-153homeobox-leucine zipper protein ATHB-6, partial
TrEMBLB9TAG80.0B9TAG8_RICCO; Transcription factor, putative (Fragment)
STRINGXP_002535237.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.13e-51homeobox protein 6