PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28310
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C2H2
Protein Properties Length: 90aa    MW: 9804.12 Da    PI: 8.3089
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28310genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000282951123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             y+C+ C++ F+++  L  H  +H
    28310 29 YECSTCKRIFKSHQALGGHRASH 51
             99**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.172951IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.14E-52990No hitNo description
PfamPF139122.3E-92953IPR007087Zinc finger, C2H2
PROSITE profilePS501579.932956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
SMARTSM003550.466890IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3886890IPR007087Zinc finger, C2H2
PfamPF139126.5E-126890IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
EEVGIDESSL VCSAAELLDH DFDGIRMKYE CSTCKRIFKS HQALGGHRAS HKKVKGCFAK  60
TSLSGGSHEC SICHRVFTSG QALGGHKRCH
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002972767.17e-39uncharacterized protein LOC9636774
SwissprotO654994e-22ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLD8RP772e-37D8RP77_SELML; EPF-type Cis2-His2 zinc finger transcription factor
STRINGEFJ259883e-38(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-24C2H2-like zinc finger protein