PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28348.m000077
Common NameRCOM_0234280
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24064.1 Da    PI: 6.2943
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28348.m000077genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.38.7e-232570247
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                   + en  +r+vtfskR++gi+KKA ELS+LC+ae+av++fs +gk++
  28348.m000077 25 KLENVNRRYVTFSKRKHGIFKKATELSTLCGAEIAVVLFSGHGKVF 70
                   6799***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-301675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.4971676IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-261787IPR002100Transcription factor, MADS-box
CDDcd002653.51E-321791No hitNo description
PRINTSPR004046.1E-201838IPR002100Transcription factor, MADS-box
PfamPF003192.1E-212671IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-203853IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-205374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDATEITNQR QRKTSKGRQK IEIKKLENVN RRYVTFSKRK HGIFKKATEL STLCGAEIAV  60
VLFSGHGKVF SCGNPDVDEV IDRYLAETEG DGGNSCLVES SSSSSSTAVQ TVDEQEYNKS  120
LARLEEMKRA VQMNSNVINN GEFWWDLPIE MMGKEELEGY KESLVKLRKN VLSKIEEMAA  180
NNAANESRII SQFIHQNGAW SGEIFNSNIY GGGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A3e-1516971694PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B3e-1516971694PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28348.m000077
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600100.11e-87agamous-like MADS-box protein AGL62
TrEMBLB9T6Y71e-157B9T6Y7_RICCO; Mads box protein, putative
STRINGXP_002534006.11e-158(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-31AGAMOUS-like 62