PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28552.m000029
Common NameLOC8260991, RCOM_0273420
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 311aa    MW: 34756 Da    PI: 6.8037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28552.m000029genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20173223255
            AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrdp   + k +r +lg+f+ta eAaka+++a+ kl+g
  28552.m000029 173 HYRGVRQRP-WGKYAAEIRDP---NrKGTRLWLGTFDTAIEAAKAYDRAAFKLRG 223
                    8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.76E-33172231No hitNo description
Gene3DG3DSA:3.30.730.101.5E-32172232IPR001471AP2/ERF domain
PfamPF008472.2E-14173223IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-23173232IPR016177DNA-binding domain
PROSITE profilePS5103224.25173231IPR001471AP2/ERF domain
SMARTSM003804.9E-37173237IPR001471AP2/ERF domain
PRINTSPR003672.0E-13174185IPR001471AP2/ERF domain
PRINTSPR003672.0E-13213233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAAQSEVASA LNHIKQHLLG DLLSPVAAAT SSSTSNLHLS STSQSDSNCS SAIDSVIPIN  60
IIDDDFFEFE AKPQIISLAT SNSSDSSTSF EFNSKPSLLE FESKPQFVPQ SSNENFFGFE  120
STIRNNLFHF ETKPKINRKP SLQISLPKKT EWIQFGKPNQ QPAIQSNDEE KKHYRGVRQR  180
PWGKYAAEIR DPNRKGTRLW LGTFDTAIEA AKAYDRAAFK LRGSRAILNF PLEAGKCSTR  240
PDDGSERKRM RESEVEEREV KKVVKIEQVE TETDLALTPS SWTALNEIFN VSPLSPLSPH  300
PPLGFPQLMV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-30172232161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap28552.m000029
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534390.10.0ethylene-responsive transcription factor 5
TrEMBLB9T8210.0B9T821_RICCO; Ethylene-responsive transcription factor, putative
STRINGXP_002534390.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.19e-55ethylene responsive element binding factor 5