PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28582.m000333

Common Name

LOC8287219, RCOM_0279060

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 245aa MW: 27002.3 Da PI: 6.6036

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28582.m000333	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	34	56	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++ F+++ +L H++ H 28582.m000333 34 YICTRCSRGFPSSQSLGGHQNAH 56 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.5E-6	32	61	No hit	No description
Pfam	PF13912	1.7E-7	33	58	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.635	34	61	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	36	56	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MQSKTNSCES SNTGSIRRAT SIGSLLTLNQ PDVYICTRCS RGFPSSQSLG GHQNAHRRER 60 NAERRVMQEE RKSILEKIKR TEMNILSSTR PWGASPPPKP TPTDHQYLKP HFAISLDKLG 120 HDHNGPLAGL KPFLDFQVQV GMGIIGLPPA SASMAAANSD HHEVPSHDEI DLEIEGDELP 180 YVAVPTGDDN NQNNPTTELM PWELIQFPDS DSSTGQVEEE AGSMKGKKKS NKVTIKKDLD 240 LNLKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28582.m000333

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002530368.1	0.0	uncharacterized protein LOC8287219
TrEMBL	B9SWJ9	0.0	B9SWJ9_RICCO; Uncharacterized protein
STRING	XP_002530368.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17044	5	5

Link Out ? help Back to Top
Phytozome	28582.m000333
Entrez Gene	8287219