PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28617.m000206

Common Name

RCOM_0290450

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Protein Properties

Length: 126aa MW: 15120.3 Da PI: 9.6426

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28617.m000206	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.3	1e-11	10	108	1	96
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld.grse 89 f k+l++s+ + ++l +p + ++++ +++ s+ t +d++g+ + +++++r+++ y+ ++ W Fv+a+ L++gD+v F+ + ++se 28617.m000206 10 FRKILKQSHIT--HQLNIPEQVLQRYpiyNLE--YSRNFTCYDKDGNLFPFRISIRRSPVYfkpYFARAVWGPFVEAKSLRVGDVVEFYTMiDNSE 101 66777444443..569********966444..67789999*******999999888889999*******************6535577 PP E..EEEE CS B3 90 felvvkv 96 + v++ 28617.m000206 102 AGIQVRA 108 6666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.6E-14	4	115	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-10	8	102	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.16E-14	9	107	No hit	No description
Pfam	PF02362	2.8E-9	10	110	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MGDRNMQLIF RKILKQSHIT HQLNIPEQVL QRYPIYNLEY SRNFTCYDKD GNLFPFRISI 60 RRSPVYFKPY FARAVWGPFV EAKSLRVGDV VEFYTMIDNS EAGIQVRAWR QEPGTNNWRH 120 VEEFMP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28617.m000206

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B9T454	3e-90	B9T454_RICCO; Uncharacterized protein
STRING	XP_002533023.1	5e-91	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15290	3	12

Link Out ? help Back to Top
Phytozome	28617.m000206