PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28617.m000214
Common NameRCOM_0291130
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 125aa    MW: 14325.5 Da    PI: 9.7666
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28617.m000214genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.6e-1013901187
                   HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
             B3 11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                    ++g l++p  +++++   +k +++ l+++desg + ++++++    +++ +v++  W +Fv++++Lk+gD ++F+ +++
  28617.m000214 13 IERG-LSVPEACIKAFqPTDKGTEMNLQVRDESGIVRTFRCRIpiGLNPKPVVFG-DWLQFVRSKDLKQGDAITFYKEKD 90
                   4555.99******9999667788999********888888877666666668888.9*******************5533 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-13391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-10391IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-16393No hitNo description
SMARTSM010190.00374105IPR003340B3 DNA binding domain
PfamPF023624.2E-91389IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MAMFSKVLQC PDIERGLSVP EACIKAFQPT DKGTEMNLQV RDESGIVRTF RCRIPIGLNP  60
KPVVFGDWLQ FVRSKDLKQG DAITFYKEKD HATGADYRIT VKKRESYYSR FKTSIHPRDI  120
TAQPV
Cis-element ? help Back to Top
SourceLink
PlantRegMap28617.m000214
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9T4628e-89B9T462_RICCO; Uncharacterized protein
STRINGXP_002533031.11e-89(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527