PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28629.m000575
Common NameRCOM_0293580
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 158aa    MW: 18314.7 Da    PI: 9.0174
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28629.m000575genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1462e-4541381128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                    lppGfrF Pt+eelv++yL++k++g++      ++++i+ +diy+++PwdLp+    +++ + ++w+fF++r++++a+g r++r t+ gyWkatg+
  28629.m000575   4 LPPGFRFYPTEEELVSFYLHNKLDGRRedlnRVMDRIIPVLDIYDYNPWDLPQfagDLSSrDPEQWFFFIPRQESEARGGRPKRLTTCGYWKATGS 99 
                    79************************966643334479999***********6466333325569********************9********** PP

            NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +v+s +++ +g+k+t+vfy+grap+g+ktdW m+ey++
  28629.m000575 100 PGQVYS-NNRSIGMKRTMVFYNGRAPNGRKTDWKMNEYKA 138
                    ******.9999***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-473148IPR003441NAC domain
PROSITE profilePS5100545.6134158IPR003441NAC domain
PfamPF023655.1E-245137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEDLPPGFRF YPTEEELVSF YLHNKLDGRR EDLNRVMDRI IPVLDIYDYN PWDLPQFAGD  60
LSSRDPEQWF FFIPRQESEA RGGRPKRLTT CGYWKATGSP GQVYSNNRSI GMKRTMVFYN  120
GRAPNGRKTD WKMNEYKANR GEASSSSSIP APSMVCIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-34313714139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28629.m000575
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530348.21e-112NAC domain-containing protein 90, partial
SwissprotQ9FMR39e-59NAC90_ARATH; NAC domain-containing protein 90
TrEMBLB9SWH91e-115B9SWH9_RICCO; NAC domain-containing protein, putative
STRINGXP_002530348.11e-115(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.16e-60NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]