PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28637.m000203
Common NameLOC8276615, RCOM_0294100
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 192aa    MW: 21185.4 Da    PI: 10.3412
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28637.m000203genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000514870123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C+k Fs+   L  H  +H
  28637.m000203 48 FECKTCNKKFSSFQALGGHRASH 70
                   89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.3E-43971IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.3E-84770No hitNo description
SMARTSM003550.114870IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-114872IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4294875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-899126No hitNo description
PROSITE profilePS501579.182104131IPR007087Zinc finger, C2H2
SMARTSM003550.28104126IPR015880Zinc finger, C2H2-like
PfamPF139125.7E-10104128IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAMKRVRQDA EFDSLDMAKC LMLLSHNLVE NSKPTNSFIR TSSNDNMFEC KTCNKKFSSF  60
QALGGHRASH KRPRLFMGPA ADSKSASSDD QAVHSSGTKK PKMHECSICG VEFALGQALG  120
GHMRRHRAAA MAQTFASSAK VKNTGCVVQK LPVLRRSNSS KRVFGLDLNL TPLENDLEYL  180
FGKMAPKVDL FV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap28637.m000203
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533000.11e-141zinc finger protein ZAT11
SwissprotQ9SLD46e-52ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLB9T4311e-140B9T431_RICCO; Zinc finger protein, putative
STRINGXP_002533000.11e-141(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-43C2H2 family protein