PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28641.m000082
Common NameLOC8284753, RCOM_0295580
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 259aa    MW: 29458.7 Da    PI: 6.4256
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28641.m000082genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19109159155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++++GVr+++ +grW+AeIrdp     r kr++lg+f+taeeAa  +++a+ kl+g
  28641.m000082 109 KKFRGVRQRP-WGRWAAEIRDPA----RrKRVWLGTFDTAEEAATVYDRAAVKLKG 159
                    59********.**********82....35**********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.1E-501257IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.49E-33109169No hitNo description
Gene3DG3DSA:3.30.730.102.0E-30110168IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-22110168IPR016177DNA-binding domain
PROSITE profilePS5103224.263110167IPR001471AP2/ERF domain
SMARTSM003804.1E-38110173IPR001471AP2/ERF domain
PfamPF008471.9E-12110158IPR001471AP2/ERF domain
PRINTSPR003671.3E-10111122IPR001471AP2/ERF domain
PRINTSPR003671.3E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSVQSTPHSR RRRVVRIMFS DPYATDSSSD DDQHDRDDDQ HDHDEDIQTE NQRQLKRKGP  60
KKHVTQLTFD SIPSVSTTVP SHDEYKHREI LTRRRPPTAP GSDVAHRKKK FRGVRQRPWG  120
RWAAEIRDPA RRKRVWLGTF DTAEEAATVY DRAAVKLKGV NAVTNFPNTV ITEKVLLRDN  180
SSNICDSSSC DSPPSAVTSS PTSVLRFDEL TPFDCFGYDT FGLEELPMPL HPADFILSGK  240
QFSGEEFVDL DDFLVDVIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22107167263ATERF1
3gcc_A4e-22107167263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192109RRRPPTAPGSDVAHRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap28641.m000082
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533832.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLB9T6G30.0B9T6G3_RICCO; AP2 domain transcription factor RAP2.3, putative
STRINGXP_002533832.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.16e-31cytokinin response factor 1