PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28644.m000924
Common NameRCOM_0297110
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 251aa    MW: 28542.7 Da    PI: 4.722
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28644.m000924genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.8e-33128752128
            NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd+++++ ++++ g+kktLvfy+grap+ge+tdWvmhey+l
  28644.m000924  12 KTGDRQWFFFSPRDRKYPNGARSNRATRQGYWKATGKDRNITC-NSRTAGVKKTLVFYRGRAPNGERTDWVMHEYTL 87 
                    67899**************************************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.2771110IPR003441NAC domain
SuperFamilySSF1019415.49E-3812110IPR003441NAC domain
PfamPF023659.9E-161787IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MQFSDSGQSI LKTGDRQWFF FSPRDRKYPN GARSNRATRQ GYWKATGKDR NITCNSRTAG  60
VKKTLVFYRG RAPNGERTDW VMHEYTLDED ELKRCPNVKD YYALYKVYKK SGPGPKNGEQ  120
YGAPFKEEDW ADDECADMNN FVTPVKQPNV VMPPVDNNKS SAQVELPLND LENFMKQIAD  180
EDPLDPPLIA DFTSNLQQVI GDEETRSTLV DPPSREVTLF EPISVSPTSC EQYDLQASLD  240
FNQSATSNCI H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-311411069165NO APICAL MERISTEM PROTEIN
1ut4_B4e-311411069165NO APICAL MERISTEM PROTEIN
1ut7_A4e-311411069165NO APICAL MERISTEM PROTEIN
1ut7_B4e-311411069165NO APICAL MERISTEM PROTEIN
3swm_A4e-311411672174NAC domain-containing protein 19
3swm_B4e-311411672174NAC domain-containing protein 19
3swm_C4e-311411672174NAC domain-containing protein 19
3swm_D4e-311411672174NAC domain-containing protein 19
3swp_A4e-311411672174NAC domain-containing protein 19
3swp_B4e-311411672174NAC domain-containing protein 19
3swp_C4e-311411672174NAC domain-containing protein 19
3swp_D4e-311411672174NAC domain-containing protein 19
4dul_A4e-311411069165NAC domain-containing protein 19
4dul_B4e-311411069165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00178DAPTransfer from AT1G34180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap28644.m000924
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014535.10.0LOW QUALITY PROTEIN: NAC domain-containing protein 17, partial
SwissprotA4FVP64e-76NAC16_ARATH; NAC domain-containing protein 16
TrEMBLB9SM950.0B9SM95_RICCO; Transcription factor, putative
STRINGXP_002527114.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.12e-78NAC domain containing protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]