PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28644.m000942
Common NameLOC8281433, RCOM_0298490
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 149aa    MW: 17006.9 Da    PI: 4.6169
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28644.m000942genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.33e-162063148
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                   s+y GVr++  +gr++AeIr p++   + r++lg+f+taeeAa a++ 
  28644.m000942 20 SKYLGVRRRQ-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAVAYDL 63
                   79*****887.**********865...5******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.83E-262078No hitNo description
SuperFamilySSF541713.92E-182079IPR016177DNA-binding domain
PfamPF008471.5E-82063IPR001471AP2/ERF domain
PROSITE profilePS5103220.1262179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-242178IPR001471AP2/ERF domain
SMARTSM003806.6E-252185IPR001471AP2/ERF domain
PRINTSPR003672.1E-82233IPR001471AP2/ERF domain
PRINTSPR003672.1E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MENLPSLLYR NPKRSTRQSS KYLGVRRRQW GRYAAEIRNP YTKERHWLGT FDTAEEAAVA  60
YDLSSISFSG IERARTNFYY PFLTPTSPPP SLPLPPPPPP SPEMEDGEQV SMEINETAIQ  120
DSNDDDESMV IATILQSFYQ STNCSSFYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1418701164Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap28644.m000942
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014531.11e-106ethylene-responsive transcription factor LEP
SwissprotQ3E7035e-28ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLB9SMB31e-105B9SMB3_RICCO; DNA binding protein, putative
STRINGXP_002527132.11e-106(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145131317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.12e-29ERF family protein