PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28649.m000212

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

NAC

Protein Properties

Length: 284aa MW: 33209 Da PI: 7.2026

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28649.m000212	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.1	1.3e-56	19	145	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeel+++yL +kv ++ + + ++i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ 28649.m000212 19 LPPGFRFHPTDEELITHYLSQKVLDNCFCA-RAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDKEIYR-A 112 79**********************9988.89***********888999************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg+kktLvfykgrapkg+kt+Wvmheyrle 28649.m000212 113 KTLVGMKKTLVFYKGRAPKGTKTNWVMHEYRLE 145 99***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-60	15	149	IPR003441	NAC domain
PROSITE profile	PS51005	53.517	19	198	IPR003441	NAC domain
Pfam	PF02365	4.4E-30	20	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MENNSTLNHH VKDDEQLELP PGFRFHPTDE ELITHYLSQK VLDNCFCARA IGEVDLNKCE 60 PWDLPWRAKM GEKEWYFFCV RDRKYPTGLR TNRATDAGYW KATGKDKEIY RAKTLVGMKK 120 TLVFYKGRAP KGTKTNWVMH EYRLEGKYSV XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXH NSCFSFQHQP TFANLQYQDS VLMPEQQFIL RMLLDNQGPN LKQTSKMEIS 240 HDTGLRPDMS SVIINPEMVQ RSFDDQEGPL SSAGPVYLDC LWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-52	16	144	14	142	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-52	16	144	14	142	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-52	16	144	14	142	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-52	16	144	14	142	NO APICAL MERISTEM PROTEIN
3swm_A	3e-52	16	144	17	145	NAC domain-containing protein 19
3swm_B	3e-52	16	144	17	145	NAC domain-containing protein 19
3swm_C	3e-52	16	144	17	145	NAC domain-containing protein 19
3swm_D	3e-52	16	144	17	145	NAC domain-containing protein 19
3swp_A	3e-52	16	144	17	145	NAC domain-containing protein 19
3swp_B	3e-52	16	144	17	145	NAC domain-containing protein 19
3swp_C	3e-52	16	144	17	145	NAC domain-containing protein 19
3swp_D	3e-52	16	144	17	145	NAC domain-containing protein 19
4dul_A	3e-52	16	144	14	142	NAC domain-containing protein 19
4dul_B	3e-52	16	144	14	142	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28649.m000212

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015583259.1	1e-179	NAC domain-containing protein 100
TrEMBL	B9T4E4	1e-179	B9T4E4_RICCO; Uncharacterized protein
STRING	XP_002533113.1	1e-180	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-89	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	28649.m000212