PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28657.m000390
Common NameLOC8267930, RCOM_0302120
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 276aa    MW: 29915.8 Da    PI: 8.5577
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28657.m000390genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00061147169123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y C++C+++Fs+ ++L  Hi +H
  28657.m000390 147 YGCKICHQVFSDFHSLGGHIASH 169
                    67******************998 PP
2zf-C2H211.80.00073208230123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y C+ C+ksF++   L  H  +H
  28657.m000390 208 YICELCSKSFPTGQALGGHKTSH 230
                    89**********99998887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0027147170IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-6147169No hitNo description
SMARTSM003550.53147169IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702147174IPR007087Zinc finger, C2H2
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-6203230No hitNo description
PROSITE profilePS5015710.741208235IPR007087Zinc finger, C2H2
PfamPF139127.3E-12208232IPR007087Zinc finger, C2H2
SMARTSM003550.15208230IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MNEDTDHSSS SVSTGSYYDH GYHKIEYFAD SAVPINLSKS LPGSNWCPTR QGAFSSSSSS  60
SSSNQKIPDD TTDVSTTLRQ ILLSKKNGRS RNGASYSYMH SRSSSGDSDF PIADKNYKGK  120
HTDIGVGNKI MKKKAPFKSK GSSSGSYGCK ICHQVFSDFH SLGGHIASHN RKKRAEEAAL  180
AAPGPELKVQ ALEKLATTEG INGDTDNYIC ELCSKSFPTG QALGGHKTSH RKRKAAPQEC  240
TDHQVASSAE NHVYEFDLNE SPNESFWGRT GTGLVY
Cis-element ? help Back to Top
SourceLink
PlantRegMap28657.m000390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002531765.10.0zinc finger protein AZF2
TrEMBLB9T0J60.0B9T0J6_RICCO; Uncharacterized protein
STRINGXP_002531765.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1882535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.14e-09C2H2 family protein