PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28694.m000665

Common Name

LOC8266956, RCOM_0311750

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

LBD

Protein Properties

Length: 245aa MW: 28021.5 Da PI: 4.7553

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28694.m000665	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.1	9.8e-41	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ ++++am+++++++++ra+dPv G++++i++lq+q+e +k+el+l 28694.m000665 15 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLNQPDKDEAMRTIIFQSDVRANDPVGGCYRIIRELQRQIEFHKNELDL 110 7*********************************************************************************************99 PP DUF260 97 lkee 100 + ++ 28694.m000665 111 VLHQ 114 8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.849	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-37	15	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSSITRIGNG TTTQACAACK YQRRKCAPDC ILAPYFPHDR QRQFLNAHKL FGVSNITKII 60 KNLNQPDKDE AMRTIIFQSD VRANDPVGGC YRIIRELQRQ IEFHKNELDL VLHQLAICRA 120 QTQQQQQPHF QILESDDSAT LGCDIVNADS LDIYDPILQY QYAQTQEEQE FVVQDNNQQL 180 QESINALAIQ ESSLSPSSPS LHLKQPFDNE CDDIKPLLDI NDVKFEPEEL VERKFLQSTQ 240 LVISS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-26	2	109	1	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-26	2	109	1	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28694.m000665

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002527399.1	0.0	LOB domain-containing protein 22
Swissprot	Q9LRW1	1e-72	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	B9SN30	1e-180	B9SN30_RICCO; LOB domain-containing protein, putative
STRING	XP_002527399.1	1e-180	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-69	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	28694.m000665
Entrez Gene	8266956

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]