PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28718.m000038
Common NameRCOM_0320300
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 129aa    MW: 14392.2 Da    PI: 9.7685
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28718.m000038genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-172674355
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +kG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  28718.m000038 26 FKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 74
                   8*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-362588IPR001471AP2/ERF domain
PROSITE profilePS5103221.5492582IPR001471AP2/ERF domain
PfamPF008477.8E-112674IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-292683IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-202683IPR016177DNA-binding domain
CDDcd000189.06E-262683No hitNo description
PRINTSPR003677.3E-112637IPR001471AP2/ERF domain
PRINTSPR003677.3E-116484IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEMEGETEKV ITRKRGGGGI ERERPFKGIR MRKWGKWVAE IREPNKRSRI WLGSYSTPVA  60
AARAYDTAVF YLRGPSARLN FPEYLAGESI SGGGGGGDMS AASIRKKATE VDLNKVPDPE  120
DSDVEWERN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-151590381Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap28718.m000038
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3617410.0JQ361741.1 Ricinus communis AP2/ERF type transcription factor (DREB1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015583945.12e-75ethylene-responsive transcription factor RAP2-10
SwissprotO221741e-48ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLB9T7X23e-87B9T7X2_RICCO; DNA binding protein, putative
STRINGXP_002534341.15e-88(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.18e-47DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]