PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28725.m000324
Common NameRCOM_0321860
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 117aa    MW: 13767.6 Da    PI: 10.7769
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28725.m000324genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.3e-12492188
                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
             B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88
                   f+k+l++ dv+k+  l +p ++++ +    +gk    ++l ++  ++++++++++ rkk++    vltkGW +Fv+  +Lk+gD++v++ ++++
  28725.m000324  4 FKKKLSQTDVTKR--LAFPTRCFKGFlpllQGK--HFVDLEVM-YKSQTMKFRCSKRKKGKYlkPVLTKGWLDFVRREKLKAGDMIVLREEKNE 92
                   8899988888875..9*******9999876555..33444444.5789******766666658899***********************55443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-12391IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00114106IPR003340B3 DNA binding domain
CDDcd100171.18E-134103No hitNo description
PfamPF023629.5E-9493IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-15492IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MMKFKKKLSQ TDVTKRLAFP TRCFKGFLPL LQGKHFVDLE VMYKSQTMKF RCSKRKKGKY  60
LKPVLTKGWL DFVRREKLKA GDMIVLREEK NEAAGAEFKI EIIMKSIRLF GKDICID
Cis-element ? help Back to Top
SourceLink
PlantRegMap28725.m000324
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9SXG41e-78B9SXG4_RICCO; Uncharacterized protein
STRINGXP_002530683.12e-79(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778