PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28752.m000339
Common NameLOC8264035, RCOM_0328910
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family AP2
Protein Properties Length: 499aa    MW: 55788.6 Da    PI: 7.1013
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28752.m000339genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.6e-17165214155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  28752.m000339 165 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 214
                    78*******************......55************************997 PP
2AP241.14.4e-13257307155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  28752.m000339 257 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 307
                    89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-9165214IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-15165222IPR016177DNA-binding domain
CDDcd000185.73E-11166221No hitNo description
PROSITE profilePS5103217.754166222IPR001471AP2/ERF domain
SMARTSM003801.3E-31166228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-17166222IPR001471AP2/ERF domain
CDDcd000185.83E-26257317No hitNo description
PfamPF008471.3E-8257307IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-17257316IPR016177DNA-binding domain
PROSITE profilePS5103215.527258315IPR001471AP2/ERF domain
SMARTSM003802.5E-32258321IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15258315IPR001471AP2/ERF domain
PRINTSPR003675.5E-6259270IPR001471AP2/ERF domain
PRINTSPR003675.5E-6297317IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MLDLNLNVES SESTQNVDSV TLMEKYQYQY QYQYQHQQYN YTEGSGTTSN SSIANADASS  60
NDESCSTRAY TGGDTISTTT DSNNKNKIYT FNFDILKVGN EENENGAVIG TKELFPVENG  120
HGIDLSFERQ QQQQEIIGVG GEVRVMQQPL QQVKKSRRGP RSRSSQYRGV TFYRRTGRWE  180
SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGIDADIN FNLGDYDEDL KQMKNLTKEE  240
FVHILRRHST GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KYIYLGLFDS EVEAARAYDK  300
AAIKCNGREA VTNFEPSTYE GEMISKASSE GSEHNLDLNL GISPSFGNCL KENEGHQQLH  360
SGPYDVYSKS SRENATSAMV GDPPFKGPLR TSDHPMFWNG IYPNFFPHEE RATDKRIELG  420
SSQGHPNWAW QMHGQVTATP MTMFSTAASS GFSFSATPPS AAIFPSKPLN PAAHNLFFSP  480
HATGGSQFYR PVKPPQAPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap28752.m000339
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530247.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK031e-114RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLB9SW780.0B9SW78_RICCO; Protein AINTEGUMENTA, putative
STRINGXP_002530247.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-118related to AP2.7