PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28859.m000318
Common NameLOC8271164, RCOM_0346880
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 171aa    MW: 19270.1 Da    PI: 6.2302
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28859.m000318genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.41.2e-38141121100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +CaaC++lrr+C ++Cvlapyfp e  ++fa vhk+FGasnv+k+++ ++e++reda+++++yeA ar+rdPvyG++g+i++lq+ +++l+ ++++
  28859.m000318  14 PCAACRMLRRRCDNNCVLAPYFPYEI-ENFAGVHKVFGASNVIKMIQMVEETRREDAVKAIIYEATARLRDPVYGCAGTIFHLQKMVHELNMQVET 108
                    7**********************987.89*****************************************************************99 PP

         DUF260  97 lkee 100
                    ++++
  28859.m000318 109 VRSQ 112
                    9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.88713113IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-3814110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDSQALARGK AHQPCAACRM LRRRCDNNCV LAPYFPYEIE NFAGVHKVFG ASNVIKMIQM  60
VEETRREDAV KAIIYEATAR LRDPVYGCAG TIFHLQKMVH ELNMQVETVR SQVLELQEQR  120
DQLLGILTKV HLSPAAPANH LAFDGSDFSL DGDNYMGYDP VKSPVECDWI V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-33111148112LOB family transfactor Ramosa2.1
5ly0_B1e-33111148112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28859.m000318
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530212.11e-128LOB domain-containing protein 1
TrEMBLB9SW431e-126B9SW43_RICCO; LOB domain-containing protein, putative
STRINGXP_002530212.11e-127(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140681921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-44LOB domain-containing protein 1