PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28872.m000248
Common NameRCOM_0351150
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 514aa    MW: 57217.5 Da    PI: 4.2968
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28872.m000248genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.21.3e-52111381128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    l+pGfrFhPtdeelv +yLk+kv++k++++ ++i+ vdiyk+ePwdLp k k+k+++ ewyfFs  dkky +g+++nrat++gyWk+tgkd++v  
  28872.m000248  11 LAPGFRFHPTDEELVRYYLKRKVTNKPFRF-DAIAVVDIYKTEPWDLPdKsKLKTRDLEWYFFSMLDKKYGNGSKTNRATEKGYWKTTGKDRPVRW 105
                    579**************************9.99**************95347777888*************************************9 PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++vg+kktLv++ grap+ge+t+Wvmheyrl
  28872.m000248 106 -NSRNVGMKKTLVYHLGRAPRGERTNWVMHEYRL 138
                    .999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-629161IPR003441NAC domain
PROSITE profilePS5100557.8211161IPR003441NAC domain
PfamPF023656.5E-2813138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MARGDSSAAS LAPGFRFHPT DEELVRYYLK RKVTNKPFRF DAIAVVDIYK TEPWDLPDKS  60
KLKTRDLEWY FFSMLDKKYG NGSKTNRATE KGYWKTTGKD RPVRWNSRNV GMKKTLVYHL  120
GRAPRGERTN WVMHEYRLTD EDLEKAGIVQ DAFVLCRIFQ KSGTGPKNGE QYGAPFVEEE  180
WDNDDEVVLL PGEEMVMTDE LVLGDDAYGE TNDLDQNFDV AVVSDNAALP VNFYHGETSN  240
YVEQSGNSSG DDKKPVIDRG GAQYCSDLPD DKVLFSFPEQ YEIDAKSVRH EYIAESSNNV  300
DATDDNYLLD EPFLDATDNP PFNEGLFLEA NDLSNPVEPE TAGDSTIFEM VDEYLNFFDA  360
NDDNLTFDPS EILGSENIVS DGASLSEKAS HMLGSIPAPP AFASEFPLKG TALQLNGAPS  420
SSSIRVTAGM IRIESITFGS DGMDWSFGKN GNVNIVLSFV MSQGNVSPAG SAPAGNSFSG  480
KTWSLVSRGW FFLMFFWVLI LSVSYKIGTY ISTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-461016716171NO APICAL MERISTEM PROTEIN
1ut4_B4e-461016716171NO APICAL MERISTEM PROTEIN
1ut7_A4e-461016716171NO APICAL MERISTEM PROTEIN
1ut7_B4e-461016716171NO APICAL MERISTEM PROTEIN
4dul_A4e-461016716171NAC domain-containing protein 19
4dul_B4e-461016716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap28872.m000248
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582995.10.0NAC domain-containing protein 53
SwissprotQ84K001e-170NAC78_ARATH; NAC domain-containing protein 78
TrEMBLB9T3080.0B9T308_RICCO; Uncharacterized protein
STRINGXP_002532627.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-166NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]