PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28959

Common Name

SELMODRAFT_28959

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 68aa MW: 7912.85 Da PI: 10.3078

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28959	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	62.4	8.6e-20	3	66	5	61
zf-Dof 5 alkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggrrknkks 61 +cprC+s nt f yynn + qPry C++C+ Wt+GG +r+v P Gg +rk+k+ 28959 3 VYQCPRCQSYNTWFDYYNNEKSTgkrdQPRYICRSCKGKWTQGGKVRDVslsPTGGNKRKSKAL 66 679**************86533444*****************988889****9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.3E-28	1	65	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-9	1	64	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	15.109	4	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 68 aa Download sequence Send to blast
DNVYQCPRCQ SYNTWFDYYN NEKSTGKRDQ PRYICRSCKG KWTQGGKVRD VSLSPTGGNK 60 RKSKALRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024516314.1	4e-41	uncharacterized protein LOC112341077
Swissprot	Q9M161	9e-12	DOF41_ARATH; Dof zinc finger protein DOF4.1
TrEMBL	D8S8G8	1e-42	D8S8G8_SELML; Uncharacterized protein (Fragment)
STRING	EFJ19409	2e-43	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00940.1	4e-14	Dof family protein

Link Out ? help Back to Top
Phytozome	28959
Entrez Gene	9634755

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]