PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28976.m000155

Common Name

LOC8276070, RCOM_0366100

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bZIP

Protein Properties

Length: 201aa MW: 23345.9 Da PI: 10.4265

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28976.m000155	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.8e-11	93	137	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 ++ rr+++NRe+ArrsR RK++ +e+L++ v L eN+++ ++l 28976.m000155 93 RKRRRMISNRESARRSRMRKQKHLENLRNQVNRLRVENREMTNRL 137 5789**********************************9998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.4E-12	89	153	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.9E-9	90	137	No hit	No description
PROSITE profile	PS50217	10.703	91	161	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-8	93	137	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.39E-10	93	141	No hit	No description
CDD	cd14702	5.38E-18	94	141	No hit	No description
PROSITE pattern	PS00036	0	96	111	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MLSTVSASFL SPDSMIGNPF ASFESGFTPW DDCSQFFENN LDSQYSSTKA AGSTSGSEEP 60 NEPNRSDPTP ANSNSSSDQE PNQRTVASVI DERKRRRMIS NRESARRSRM RKQKHLENLR 120 NQVNRLRVEN REMTNRLRFV LYHWQSVRRE NDQLRSEHSM LRQKLSNIRQ ILMFRQLQQF 180 TSAWPCNNTV TTEQIPPSLI T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	96	RKRRR
2	92	113	RKRRRMISNRESARRSRMRKQK
3	105	112	RRSRMRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28976.m000155

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002533570.1	1e-146	basic leucine zipper 4
TrEMBL	B9T5Q1	1e-145	B9T5Q1_RICCO; Ocs element-binding factor, putative
STRING	XP_002533570.1	1e-146	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5435	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	1e-38	basic leucine-zipper 5

Link Out ? help Back to Top
Phytozome	28976.m000155
Entrez Gene	8276070