PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29000.m000028
Common NameRCOM_0369020
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 158aa    MW: 17756.2 Da    PI: 10.2157
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29000.m000028genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.31.2e-09229954128
            NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    + +ew+fFs+r+k +         t+ gy   + + +e + +          ++elvg  + L fy+gr p g+k++W+++e+r+
  29000.m000028  22 KPHEWFFFSNRRKGKI-------LTEGGYFDLSSSAREAVYErstgptgsrkTSELVGFLRRLDFYNGRPPAGTKSKWTIEEFRV 99 
                    4569****99977554.......455555554433333222224444433334778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.8061128IPR003441NAC domain
SuperFamilySSF1019413.14E-1220128IPR003441NAC domain
PfamPF023652.4E-52399IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MNTSAAIFSL GFLIAGLFKH GKPHEWFFFS NRRKGKILTE GGYFDLSSSA REAVYERSTG  60
PTGSRKTSEL VGFLRRLDFY NGRPPAGTKS KWTIEEFRVN PSTVKVKNDD RSTKRKVSNL  120
VVCKVINKEP PPKPEGWIEI PITICESGQD KESGVDKE
Cis-element ? help Back to Top
SourceLink
PlantRegMap29000.m000028
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015757.11e-101NAC domain-containing protein 45-like
TrEMBLB9T8161e-112B9T816_RICCO; Uncharacterized protein
STRINGXP_002534385.11e-113(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14452718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-08NAC domain containing protein 32