PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29005.m000261
Common NameRCOM_0372160
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 85aa    MW: 10257 Da    PI: 6.2587
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29005.m000261genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.4e-09751247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++W+ eE +++    + l ++ W+++a  ++ ++t  ++k+++  +
    29005.m000261  7 QKWSREENKIFEMNYEHLMKEEWERVALLLP-NKTVDDIKLHYKYL 51
                     89*****************************.***********876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.342152IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-6353IPR009057Homeodomain-like
SMARTSM007171.2E-5554IPR001005SANT/Myb domain
PfamPF002493.0E-7652IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-8858IPR009057Homeodomain-like
CDDcd001671.02E-5852No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MASKETQKWS REENKIFEMN YEHLMKEEWE RVALLLPNKT VDDIKLHYKY LLEDIELIES  60
GLNKCPRIPV KIEKNLHLLA LTKFE
Cis-element ? help Back to Top
SourceLink
PlantRegMap29005.m000261
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9T1043e-54B9T104_RICCO; Uncharacterized protein
STRINGXP_002531923.15e-55(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1753345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-11MYB family protein