PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29020
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family bZIP
Protein Properties Length: 163aa    MW: 17530.8 Da    PI: 11.8632
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29020genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_125.52.8e-0880113134
             XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeek 34 
             eke+kr +r+ +NR++A+  R+RKka+++ Le+ 
   29020  80 EKERKRLKRLLRNRVSAQQARERKKAYLASLEQT 113
             89*****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.1E-780144IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.08282145IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.1E-1284143No hitNo description
SuperFamilySSF579591.62E-984142No hitNo description
CDDcd147041.14E-1385136No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MTAGSGGSGR AKRAGAGARG SGTPPSGAVS KPTARGGRAA ANQGGFGMGY VGRNSMHIPH  60
GNTALSVKAD EERLNTITDE KERKRLKRLL RNRVSAQQAR ERKKAYLASL EQTEAQKANR  120
LHELENRVTT LERENQMLRQ VIQTVTRRAV PPNASDFQVP AM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18188ERKRLKRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005810.0CP000581.1 Ostreococcus lucimarinus CCE9901 chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001415903.11e-114predicted protein
TrEMBLA4RRH61e-113A4RRH6_OSTLU; Uncharacterized protein
STRINGABO941951e-113(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46161010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-13bZIP family protein