PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29032.m000021
Common NameRCOM_0375950
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 399aa    MW: 45111.7 Da    PI: 7.1686
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29032.m000021genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.2e-52151421128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ 
  29032.m000021  15 MLPGFRFHPTDEELVGFYLKRKIQQRSLPI-ELIKQVDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSd 109
                    579***************************.89***************8888999***************************************95 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  29032.m000021 110 GTKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 142
                    6667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5714173IPR003441NAC domain
PROSITE profilePS5100556.75815173IPR003441NAC domain
PfamPF023651.2E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEEKHDVDKN IDDVMLPGFR FHPTDEELVG FYLKRKIQQR SLPIELIKQV DIYKYDPWDL  60
PKLATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSDG TKCIGLKKSL  120
VFYRGRAAKG MKTDWMMHEF RLPSVAEPSP PKKFLDKSLP PNDAWAICRI FKKTNSMAQR  180
ALNHSWITQL PETTAPDILN QGAAAAGHCT QYSSENISCT TEIGSVFQIC SNTDLQQASS  240
SNFSAIDISS YKPINPAIEK PSLFPVSNGD HHHHLPNNNF MFSPLEMSGQ NKCSTTIDAS  300
NCMLLNPASE SIDFQEPEHH QYNGFSIRLP QETQGHMDAG IDEASALRKN QSGIHHDSNQ  360
WGNMRSISFP FNLPTNLPWD SPPCPSEMSS AYSTNKCYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-5311763171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29032.m000021
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015776.10.0protein FEZ
SwissprotQ9ZVH01e-104FEZ_ARATH; Protein FEZ
TrEMBLB9T8G50.0B9T8G5_RICCO; NAC domain-containing protein, putative
STRINGXP_002534534.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-105NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]