PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29092.m000454
Common NameRCOM_0383000
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 521aa    MW: 58650.6 Da    PI: 4.6227
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29092.m000454genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.72.7e-31841792102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT....TEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY....gFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                    Fl+k+y++++d+ l+ +isw ++g+sfvv+d+ ef++ vLp+ Fkh+nf+SFvRQLn+Y    gF+k+++++         weF+++ F++gk++l
  29092.m000454  84 FLSKTYDLVNDRILDPIISWGSTGESFVVWDPVEFSRVVLPRNFKHNNFSSFVRQLNTYvgiaGFRKIDSDK---------WEFANEAFRRGKRHL 170
                    9**********************************************************9999999999988.........*************** PP

                    XXXXXXXXX CS
   HSF_DNA-bind  94 lekikrkks 102
                    l++i+r+k 
  29092.m000454 171 LKNIQRRKP 179
                    ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.71E-3180177IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5280177IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.8E-3481177IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-2884177IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1084107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-10122134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-10135147IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MNPEDEKSFK PTDSGTTSSS SNSEPDKPLM GSSQFYPSVS PFSSPLMEVF EFRANTISPT  60
DDDDMAAEVP QPLANLHENP IPPFLSKTYD LVNDRILDPI ISWGSTGESF VVWDPVEFSR  120
VVLPRNFKHN NFSSFVRQLN TYVGIAGFRK IDSDKWEFAN EAFRRGKRHL LKNIQRRKPL  180
QSQQVGSYTG PPTETGLSEL ESEIEILRKQ RSMMMQEVVE LQQQQRGSVH HMKTVNRRLQ  240
AAEQRQKQMV SFLAKLFQNP AFLARLRQNK EQGNIGSSRM KYVKHQQLEP GQSESRLEGQ  300
VVKYRPEWKD VPLSSLVPDI NPASFKQSPD YNLQDMLETG EEAVGMAFPI ENVPLDEVAI  360
LDELVVAQGC IQNPAQYGEG ASNMRTEDPQ FKGKNIMNPQ QEVGPEYFIA FPEDLVAEKD  420
FPEFSSPAID SIVKQEDVWN MEFDPQAYMP SSSQELWGNL VPYDVPELGS SAGFSDIWGL  480
GSLQAAGSSG IHKRPADENP TAKLEGHADQ LKDDSLKNID Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-208117726129Heat shock factor protein 1
5d5v_B2e-208117726129Heat shock factor protein 1
5d5v_D2e-208117726129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29092.m000454
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015580500.10.0heat stress transcription factor A-3
SwissprotQ8GYY14e-93HSFA3_ARATH; Heat stress transcription factor A-3
TrEMBLB9SRG80.0B9SRG8_RICCO; DNA binding protein, putative
STRINGXP_002528587.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.16e-85heat shock transcription factor A3
Publications ? help Back to Top
  1. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]
  4. Hu Z, et al.
    Histone acetyltransferase GCN5 is essential for heat stress-responsive gene activation and thermotolerance in Arabidopsis.
    Plant J., 2015. 84(6): p. 1178-91
    [PMID:26576681]
  5. Song C,Chung WS,Lim CO
    Overexpression of Heat Shock Factor Gene HsfA3 Increases Galactinol Levels and Oxidative Stress Tolerance in Arabidopsis.
    Mol. Cells, 2016. 39(6): p. 477-83
    [PMID:27109422]
  6. Kim GD,Cho YH,Lee BH,Yoo SD
    STABILIZED1 Modulates Pre-mRNA Splicing for Thermotolerance.
    Plant Physiol., 2017. 173(4): p. 2370-2382
    [PMID:28223317]
  7. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]