PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29092.m000466
Common NameRCOM_0384540
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 227aa    MW: 25229.1 Da    PI: 6.5149
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29092.m000466genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.69.8e-164797155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   + y GVr+  ++g+Wv+e+r p++n  + r++lg+f ++++Aa+a++ a+ +l+g
  29092.m000466 47 PVYNGVRR--RNGKWVSELRQPYNN--KSRIWLGTFPSPDMAARAYDVAAFALRG 97
                   5799**85..47*********9998..5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-104797IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1848107IPR016177DNA-binding domain
PROSITE profilePS5103220.17848105IPR001471AP2/ERF domain
SMARTSM003808.4E-2848111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2648107IPR001471AP2/ERF domain
PRINTSPR003676.2E-74960IPR001471AP2/ERF domain
CDDcd000187.92E-2749107No hitNo description
PRINTSPR003676.2E-787107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEFKQDPSPI PSSTNSHQNN HPNPHSPSMA TKKRKAGRKK FQETRHPVYN GVRRRNGKWV  60
SELRQPYNNK SRIWLGTFPS PDMAARAYDV AAFALRGDSA SLNFPESVHL LPQARSTSIK  120
DIQYAALEAA DQSVSGGGGG GSDVDHLFQC SSSSLSFCSS TIEGSDNVGK DWNKNMNMFL  180
DEEELFNMPA LLDSMAEGLI LTPPAMKKGF NWNNVEDDPV DLFFWTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-14461101277Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29092.m000466
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014795.11e-124uncharacterized protein LOC8288395
TrEMBLB9SRI01e-169B9SRI0_RICCO; Dehydration-responsive element-binding protein 1B, putative
STRINGXP_002528599.11e-170(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.16e-44C-repeat/DRE binding factor 2