PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29097

Common Name

SELMODRAFT_29097

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 64aa MW: 7370.18 Da PI: 10.2142

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29097	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	57.7	2.5e-18	3	63	5	58
zf-Dof 5 alkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggrrkn 58 +cprC+s nt+f yynn + qPry C++C+ Wt+GG +r v P Gg +r + 29097 3 VYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYACRSCKGKWTQGGQVRVVslsPTGGNKRTS 63 679**************86533444******************99667788888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.4E-27	1	64	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-8	1	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 64 aa Download sequence Send to blast
DNVYQCPRCQ SYNTRFDYYN NEKSTGKRDQ PRYACRSCKG KWTQGGQVRV VSLSPTGGNK 60 RTSK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002992665.1	6e-37	uncharacterized protein LOC9630524
Refseq	XP_024522107.1	6e-37	uncharacterized protein LOC112343218
TrEMBL	D8T546	2e-39	D8T546_SELML; Uncharacterized protein (Fragment)
STRING	EFJ08196	4e-40	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	4e-13	Dof family protein

Link Out ? help Back to Top
Phytozome	29097
Entrez Gene	9658510

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]