PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29103
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family LSD
Protein Properties Length: 243aa    MW: 25188 Da    PI: 8.5001
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29103genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD145.51.2e-141240125
  zf-LSD1  1 Cg....gCrtlLsYPrGApsVRCalCdtV 25
             Cg    gC++lLsYP+G+p+VRCalCd+V
    29103 12 CGdarrGCGALLSYPTGSPLVRCALCDHV 40
             777777**********************9 PP
2zf-LSD140.54.5e-137599125
  zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
             C gC++++++P++A++VRCa+Cd+V
    29103 75 CVGCDVVMRFPADATHVRCAMCDAV 99
             ************************9 PP
3zf-LSD139.49.7e-13148172125
  zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
              C+gCr++L+YP G+ sVRC+ C +V
    29103 148 CEGCRVTLAYPGGSASVRCSACGAV 172
              ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF069433.9E-111240IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.5E-61841IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.4E-674100IPR005735Zinc finger, LSD1-type
PfamPF069435.5E-87599IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.7E-8146173IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-9148172IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTRARATSEI TCGDARRGCG ALLSYPTGSP LVRCALCDHV TRTPAATDPT RRRAVAFDFD  60
FDDAGARDRE AQARCVGCDV VMRFPADATH VRCAMCDAVN VNARTGTRAP RASGTRASSA  120
LAARDAARER ATRNADDAWA RGTAYVRCEG CRVTLAYPGG SASVRCSACG AVTRCAERAT  180
PSTTGEGSSV KSARGGDHAT LTSDNLVVVE NPPTVSESGK IVSNIAVGVR LGSDGGESRR  240
GE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005810.0CP000581.1 Ostreococcus lucimarinus CCE9901 chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001415612.11e-169predicted protein
TrEMBLA4RRQ71e-168A4RRQ7_OSTLU; Uncharacterized protein
STRINGABO939041e-169(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46131111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.71e-13LSD family protein