PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29146

Common Name

SELMODRAFT_29146, SELMODRAFT_29148, WRKY_28, WRKY_3

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

WRKY

Protein Properties

Length: 106aa MW: 11154.7 Da PI: 9.3156

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29146	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.9	4.8e-29	1	54	7	59
EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 7 WrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d++v+++tYeg+Hnh+ 29146 1 WRKYGQKMAKGNPCPRAYYRCTMAsGCPVRKQVQRCADDTSVLVTTYEGSHNHQ 54 *********************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00774	2.3E-30	1	55	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.9E-28	1	56	IPR003657	WRKY domain
Pfam	PF03106	9.7E-25	1	54	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-25	1	56	IPR003657	WRKY domain
PROSITE profile	PS50811	28.013	1	56	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
WRKYGQKMAK GNPCPRAYYR CTMASGCPVR KQVQRCADDT SVLVTTYEGS HNHQLPPAAT 60 SMASTTSAAA TMLLSGSTAS STDLSFMAGM LTGAPTISAT TPFPTV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-23	1	58	20	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269\|PubMed:25733771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00428	DAP	Transfer from AT4G04450	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024525176.1	2e-71	WRKY transcription factor 6-like
Swissprot	Q9XEC3	2e-48	WRK42_ARATH; WRKY transcription factor 42
TrEMBL	D8QSS5	7e-72	D8QSS5_SELML; Uncharacterized protein WRKY_28 (Fragment)
STRING	EFJ33984	1e-72	(Selaginella moellendorffii)
STRING	EFJ37492	1e-72	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	7e-36	WRKY family protein

Link Out ? help Back to Top
Phytozome	29146
Entrez Gene	9646887 \| 9659937

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]