PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29155.m000023
Common NameLOC8261812, RCOM_0391280
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 156aa    MW: 17351.3 Da    PI: 6.5145
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29155.m000023genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72e-11120156138
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                      rg W + Ed +l+++v+q+G+ +W++Ia+ +  gR+++
    29155.m000023 120 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGN 156
                      899*****************************.***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.667115156IPR017930Myb domain
SuperFamilySSF466891.2E-8118156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-12119156IPR009057Homeodomain-like
PfamPF002493.5E-10120156IPR001005SANT/Myb domain
CDDcd001679.27E-10123156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MSLVQHQRSD NNNGFNGYQD INFLTPASTS QLSLSNTFGL ENKNPQMGFQ ILSHSMDLNG  60
KSCTTVQQVA ESRGTKRTNE ESDELFIVQK KSNLSLSLSE EEELKISVPA KTGHTKLCAR  120
GHWRPAEDAK LKELVAQYGP QNWNLIAENL EGRSGN
Cis-element ? help Back to Top
SourceLink
PlantRegMap29155.m000023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346324e-56KM034632.1 Jatropha curcas clone JcMYB011 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015583902.11e-113transcription factor MYB105
TrEMBLB9T7R91e-112B9T7R9_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002534288.11e-113(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.12e-19myb domain protein 56