PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29323
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family NF-YA
Protein Properties Length: 122aa    MW: 13509.4 Da    PI: 12.1567
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29323genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA65.61.3e-20356258
  CBFB_NFYA  2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
               +++YVNaKQy++I++RRqkRa++++   +++ +  +  h SR+ hA++R Rg++G++
      29323  3 AAVYVNAKQYDAIVRRRQKRARANA---TRTPGVVNAKHPSRSAHAKNRIRGKNGKY 56
               789**********************...4458***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115215.66159IPR001289Nuclear transcription factor Y subunit A
SMARTSM005215.0E-10159IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.0E-15456IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MDAAVYVNAK QYDAIVRRRQ KRARANATRT PGVVNAKHPS RSAHAKNRIR GKNGKYLTRD  60
ELLRGLGGPE GRARAEARER EIAEREAKRV ERAAVREATK ARARAQRAAA DAVRAAKKSR  120
K*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0006000.0CP000600.1 Ostreococcus lucimarinus CCE9901 chromosome 20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422464.11e-76predicted protein
TrEMBLA4SAN53e-75A4SAN5_OSTLU; Uncharacterized protein
STRINGABP007815e-76(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1330122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-09nuclear factor Y, subunit A3