PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29333.m001059
Common NameLOC8259768, RCOM_0420390
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YA
Protein Properties Length: 314aa    MW: 34463.1 Da    PI: 9.5864
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29333.m001059genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA92.74.6e-29155211158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    d p++VN+KQy++I++RR++Rak+e e++  +++rkpy+h SRh hA+rRpRg+gGrF
  29333.m001059 155 DGPIFVNPKQYHGIIRRRKSRAKAELENRP-IRKRKPYMHLSRHLHAMRRPRGTGGRF 211
                    57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.0E-32153214IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.434154214IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-25157211IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-21157179IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-21188211IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAVKTLYFKE HEGTVHNPIG QLSSVPSMPW WSSFGPQSVY GEPYDLLKPS TMENPIGGDR  60
VTAVKQVRPD TRQDLDKGNT IHFTVFRGDC KISSEGQKPP QTAISLQTAL PEHRALIDLG  120
FGQPVVDQCY GLYAAYGSQI PGRVMLPMNM TTDDDGPIFV NPKQYHGIIR RRKSRAKAEL  180
ENRPIRKRKP YMHLSRHLHA MRRPRGTGGR FLNSGNGKGG AVAKKAYDVE ISQPTGSHSS  240
EVLQSDSGGT NGGGSNLSGS EVTSMYSKRD LDHFSINLLG PPVHSFSVMM DNGHSIVMPS  300
KWVAAAEDCC NLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-14155214262HAPB protein
4g92_A1e-14155214262HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170188RRKSRAKAELENRPIRKRK
2170189RRKSRAKAELENRPIRKRKP
3171189RKSRAKAELENRPIRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMap29333.m001059
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015577804.10.0nuclear transcription factor Y subunit A-10
RefseqXP_025013994.10.0nuclear transcription factor Y subunit A-10
RefseqXP_025013995.10.0nuclear transcription factor Y subunit A-10
TrEMBLB9SDK40.0B9SDK4_RICCO; Transcription factor, putative
STRINGXP_002524073.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.26e-53nuclear factor Y, subunit A10