PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29346.m000115
Common NameRCOM_0425580
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 439aa    MW: 50504.1 Da    PI: 4.4421
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29346.m000115genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.46.3e-15161512128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykv.ePwdLpkkvka....eekewyfFskrdkkya.tgkrknr..atksgyWk..a 85 
                    ++G+rF Pt+++lv +yL+ k +g+  ++e+   +k +d y   ePw++ +k+++    +++++yfF++ +k ++ +g++ +r    ++g+W+  +
  29346.m000115  16 AVGLRFCPTEKQLVAYYLHGKNNGRFSSVENQlpVKYCDFYGKeEPWEIWEKFDGdklsDHESLYFFTTLKKVTPgRGHNISRriGSTAGTWHgeT 111
                    68**********************99666554358889*996549****753333223255577****999988845777666233558****533 PP

            NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +g++ ++++ +g ++   k + +  + ++  +   W m ey+l
  29346.m000115 112 SGNSSRLHH-NG-VTAYMKRFNYR-NPSRLDQDRCWNMLEYSL 151
                    344444444.55.55555567776.5555557888******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-175165IPR003441NAC domain
PROSITE profilePS5100520.44315166IPR003441NAC domain
PfamPF023651.1E-1217151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MMQETQNTSS PWANMAVGLR FCPTEKQLVA YYLHGKNNGR FSSVENQLPV KYCDFYGKEE  60
PWEIWEKFDG DKLSDHESLY FFTTLKKVTP GRGHNISRRI GSTAGTWHGE TSGNSSRLHH  120
NGVTAYMKRF NYRNPSRLDQ DRCWNMLEYS LEGGESRYVI CQLKKSRKQS KKRKSQTVDD  180
DFVQVLEPVK RLRIEQELPK DFQENPKAVD VVPAMHEQDV MATMRNPLPY NSDEGDYCLG  240
DNQVNDSEPD MHSRAEEELI KLLEENLQEN QNAAVDIVHS TEKQDAMAAT LAMPVPLPDD  300
FYLDLFNFDD YFLRDDPNVS VEASEIDKRL RVEEELPTNI DKNQQAADAV VEQELQNNFQ  360
ENKHAADYME PTMEEQELKS QENQGVAVHT VPAPDILALA ASMPWPSGPE DSIIVNDRIL  420
DHDMDPAFYY DDLFGGYMY
Cis-element ? help Back to Top
SourceLink
PlantRegMap29346.m000115
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9T5V10.0B9T5V1_RICCO; Uncharacterized protein
STRINGXP_002533620.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.27e-10TCV-interacting protein