PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29382.m000084
Common NameLOC8276117, RCOM_0428790
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 366aa    MW: 41512.2 Da    PI: 7.4974
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29382.m000084genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.51.3e-53181471129
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePw+L++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + 
  29382.m000084  18 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVIREVDLNKMEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIR 112
                    69****************************.99**************963433332556************************************* PP

            NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                    + + +++g++ktLvfy+grap+g+ktdW+mheyrle
  29382.m000084 113 N-NYKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 147
                    9.9999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-6117169IPR003441NAC domain
PROSITE profilePS5100558.12618169IPR003441NAC domain
PfamPF023656.7E-2819146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGSSTGGGGG GGGGAGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMEVI REVDLNKMEP  60
WELQERCRIG STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNNYKKIGM  120
RKTLVFYRGR APHGQKTDWI MHEYRLEDGD DVNGNSNEDG WVVCRVFKKK NLFKVGNEAT  180
TSINSSDHQH LNSNSNNPSI TIQPRSFMHR DSQLLLRDQL PFELNKPELA LHHYPHNMAT  240
SQYSLFQVQT LMPTQTKPVG YDQYPNPARD CESGSESLRY DQAGLDVGSC EPTHHHHQQQ  300
MGIGRDEGGA GLNDQWAMLD RIVTPHIGED DSSKGVRFED ANASSVNPIN HLSLRGEMMD  360
FWGYGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-541817117167NO APICAL MERISTEM PROTEIN
1ut4_B8e-541817117167NO APICAL MERISTEM PROTEIN
1ut7_A8e-541817117167NO APICAL MERISTEM PROTEIN
1ut7_B8e-541817117167NO APICAL MERISTEM PROTEIN
3swm_A7e-541817120170NAC domain-containing protein 19
3swm_B7e-541817120170NAC domain-containing protein 19
3swm_C7e-541817120170NAC domain-containing protein 19
3swm_D7e-541817120170NAC domain-containing protein 19
3swp_A7e-541817120170NAC domain-containing protein 19
3swp_B7e-541817120170NAC domain-containing protein 19
3swp_C7e-541817120170NAC domain-containing protein 19
3swp_D7e-541817120170NAC domain-containing protein 19
4dul_A8e-541817117167NAC domain-containing protein 19
4dul_B8e-541817117167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29382.m000084
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103828e-41AC210382.1 Populus trichocarpa clone POP018-P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533613.10.0protein BEARSKIN2
SwissprotQ9SV871e-158BRN2_ARATH; Protein BEARSKIN2
TrEMBLB9T5U40.0B9T5U4_RICCO; NAC domain-containing protein, putative
STRINGXP_002533613.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-158NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]