PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29475.m000235
Common NameRCOM_0442900
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 225aa    MW: 24473.1 Da    PI: 7.6444
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29475.m000235genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018116138123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++Cg  F++   L  H+r+H
  29475.m000235 116 HECSICGAEFNSGQALGGHMRRH 138
                    78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.13848IPR007087Zinc finger, C2H2
SuperFamilySSF576673.98E-6113141No hitNo description
Gene3DG3DSA:3.30.160.603.4E-4114140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.6E-13116140IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471116143IPR007087Zinc finger, C2H2
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSGEANYWGV RRDEYMLFVS GGGGGGGALG GGCGCWVALG GHRASHKKPK GMNHINDENY  60
SKKQLAISSD EEDGHYRDIS SLSLQLSNNN NNNIITNNSN TNRGIYNSNQ NKAKIHECSI  120
CGAEFNSGQA LGGHMRRHRG PMGTTTAMTN ASSTTLSLTP MARIESEEPK TARNLLSLDL  180
DLNLPAPDDE KLPFASKQHQ HQHQQEQKPK PPLVFSSPAL VDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMap29475.m000235
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015583096.11e-127zinc finger protein ZAT5
TrEMBLB9T3G61e-168B9T3G6_RICCO; Nucleic acid binding protein, putative
STRINGXP_002532785.11e-169(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141