PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29489
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family Nin-like
Protein Properties Length: 231aa    MW: 26384.2 Da    PI: 8.0026
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29489genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK29.71.3e-0963106649
  RWP-RK   6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 
             +l++l ++  +p  ++Ak  g+       +CR+ G+ RWPhR  
   29489  63 DLHELYAFLMMPADKVAKAFGMPSGSFRLQCRKAGVTRWPHRHA 106
             5788999999********************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151912.60537129IPR003035RWP-RK domain
PfamPF020421.8E-663108IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MRTIANERDA LAATEARAAR AILDHRLGII DDDQRARRAA LVAKQFAERE ALAIDEELDE  60
PFDLHELYAF LMMPADKVAK AFGMPSGSFR LQCRKAGVTR WPHRHAQAVV GCHEYIAQLM  120
QHTLAQFEYS IDDMEMCDVN YYSHRARSAF LRMDYAMTDL LEDLDTLEKY ARALEGMFLR  180
TGTFDSVRSP EAFNRIRTKI YKHRSKVGCF VRKLFPSNLG GAIRPSLFDK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0006000.0CP000600.1 Ostreococcus lucimarinus CCE9901 chromosome 20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422716.11e-171predicted protein
TrEMBLA4SB511e-169A4SB51_OSTLU; Uncharacterized protein
STRINGABP010331e-170(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1331433