PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29495

Common Name

SELMODRAFT_29495, SELMODRAFT_29496

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GATA

Protein Properties

Length: 55aa MW: 6327.28 Da PI: 11.0288

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29495	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	42.6	8.6e-14	1	24	11	34
GATA 11 lWRrgpdgnktLCnaCGlyyrkkg 34 +WR gp+g+ktLCnaCG+++++ + 29495 1 QWRAGPEGPKTLCNACGVRFKSGR 24 8********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	1.47E-8	1	49	No hit	No description
Pfam	PF00320	1.7E-11	1	25	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	6.8E-9	1	22	IPR013088	Zinc finger, NHR/GATA-type
SMART	SM00401	5.7E-4	1	35	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 55 aa Download sequence Send to blast
QWRAGPEGPK TLCNACGVRF KSGRLFPEYR PALSPTFLSE VHSNSHRKVL EMRRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024522778.1	8e-32	nitrogen regulatory protein GLN3-like
Swissprot	Q8LAU9	3e-28	GATA1_ARATH; GATA transcription factor 1
TrEMBL	D8RFP5	3e-33	D8RFP5_SELML; Uncharacterized protein (Fragment)
STRING	EFJ05626	4e-34	(Selaginella moellendorffii)
STRING	EFJ28904	4e-34	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP68	17	287

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24050.1	1e-30	GATA transcription factor 1

Link Out ? help Back to Top
Phytozome	29495
Entrez Gene	9640860 \| 9645535

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]