PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29498

Common Name

SELMODRAFT_29498, SELMODRAFT_29502

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GATA

Protein Properties

Length: 55aa MW: 6281.29 Da PI: 11.6165

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29498	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	40.6	3.4e-13	1	24	11	34
GATA 11 lWRrgpdgnktLCnaCGlyyrkkg 34 +WR gp g+ktLCnaCG+++++ + 29498 1 QWRTGPLGPKTLCNACGVRFKSGR 24 8********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	0.0017	1	35	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.9E-9	1	49	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.0E-8	1	23	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	8.5E-11	1	25	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 55 aa Download sequence Send to blast
QWRTGPLGPK TLCNACGVRF KSGRLFPEYR PAASPSFVPQ KHSNSHKKVL EMRRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024525333.1	5e-32	GATA transcription factor 21-like
Swissprot	O82632	4e-29	GATA9_ARATH; GATA transcription factor 9
TrEMBL	D8QT28	3e-33	D8QT28_SELML; Uncharacterized protein (Fragment)
STRING	EFJ34037	5e-34	(Selaginella moellendorffii)
STRING	EFJ37544	5e-34	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP68	17	287

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	2e-31	GATA transcription factor 9

Link Out ? help Back to Top
Phytozome	29498
Entrez Gene	9629110 \| 9658829

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]