PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29509
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family bHLH
Protein Properties Length: 258aa    MW: 27568.9 Da    PI: 4.7682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29509genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12102153254
            HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
    HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
            +++++ rE+rRRd +Ns+feeL  +l +     +++  sKa+++  A+e Ik L
  29509 102 KKTKSTREKRRRDVLNSRFEELSAVLEPgE--SQGESQSKATVVFAATELIKRL 153
            7899************************88..48888***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-993162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.68E-898156No hitNo description
PROSITE profilePS5088812.15100153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-8101155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-10102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-6106159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDGATPTADW LSDFFDSFDA DDVGAFDGAN AFADVPTEVI GGEGPRVRAA GTKRKATEEA  60
DGSQDERVAV TATSVAATSV AATTAAATTA TGRSNVLSEG AKKTKSTREK RRRDVLNSRF  120
EELSAVLEPG ESQGESQSKA TVVFAATELI KRLRVEHARL ANMIMRFQED NLLKTELTQK  180
LAAERDQLMQ EKTHLLREKL RIEAQLQGFL TSMPFASPAD GMVSTKSASG VAAWTVPMPF  240
MPASEEGEDV TLRAPVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0006000.0CP000600.1 Ostreococcus lucimarinus CCE9901 chromosome 20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422567.10.0predicted protein
TrEMBLA4SB730.0A4SB73_OSTLU; Uncharacterized protein
STRINGABP008840.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP546069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-12bHLH family protein