PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29569.m000146

Common Name

RCOM_0452680

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 245aa MW: 28050.7 Da PI: 5.9612

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29569.m000146	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.2	8.6e-26	77	167	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYAk++GF++r+++ ++s ++ ++ r+fvCs+eg+r+ +++ +++ +r+ tr gCka++++ ++ gkw vtk++ eHnH+l+ 29569.m000146 77 DFYFEYAKRTGFTIRTNRIRHSLKDMAVIGRDFVCSREGFRAAKHTLrKDRVLPPRPITREGCKAMVRLAARDGGKWIVTKFVREHNHKLM 167 6***************************************9998822333349********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-23	77	167	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MTSTTNGHDG DGVSDDETLV TCEEHKDTEG GLFLHCDSHI VVNNGMILAE PSIENLSANT 60 LEPYTGMAFT SLDDARDFYF EYAKRTGFTI RTNRIRHSLK DMAVIGRDFV CSREGFRAAK 120 HTLRKDRVLP PRPITREGCK AMVRLAARDG GKWIVTKFVR EHNHKLMTHC NFSGELPTIN 180 ILSEEEKDKK IQDLYDELQH ERERSSVIRQ QLWMVLKDVE EHAEFMSLRV EDIINSLKEI 240 ELGNA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29569.m000146

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015583375.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	B9T539	0.0	B9T539_RICCO; Uncharacterized protein
STRING	XP_002533358.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15728	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	7e-42	FAR1 family protein

Link Out ? help Back to Top
Phytozome	29569.m000146