PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29569.m000147

Common Name

LOC8261705, RCOM_0452690

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 247aa MW: 28716.2 Da PI: 6.7886

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29569.m000147	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.5	6.2e-25	74	165	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y++++GF++r+++ ++s ++++i+ r+fvCskeg+r+ + +k ++ ++ + tr gC a+l++ ++ +kw+++ +++eHnHel+p 29569.m000147 74 EFYEMYGRQMGFTIRNNRIRRSLKDNSIIGREFVCSKEGFRAGKCTKrENGVISSLPATREGCSAMLRIAAKDGAKWVIYGFNKEHNHELNP 165 6**************************************9887772344556889******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-22	74	165	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MASTSGQQVR FNGNYRRWLA ETFERHETTN DELSNNLDGD DNIIKPFIQN FPTALEPVEP 60 IVGKEFESAE DAREFYEMYG RQMGFTIRNN RIRRSLKDNS IIGREFVCSK EGFRAGKCTK 120 RENGVISSLP ATREGCSAML RIAAKDGAKW VIYGFNKEHN HELNPSKIPP RRSHRIAFNE 180 DEKDLKIREL STELHREKKK SAAYQEQLQR VLKYIEEHTQ RLSLQIDTVA NKVRELECEE 240 PDCLDFD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29569.m000147

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002533359.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_015583376.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	B9T540	0.0	B9T540_RICCO; Uncharacterized protein
STRING	XP_002533359.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15811	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-46	FAR1 family protein

Link Out ? help Back to Top
Phytozome	29569.m000147
Entrez Gene	8261705